Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants.
Identifieur interne : 002103 ( Main/Exploration ); précédent : 002102; suivant : 002104Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants.
Auteurs : Gregory Bonito [États-Unis] ; Hannah Reynolds ; Michael S. Robeson ; Jessica Nelson ; Brendan P. Hodkinson ; Gerald Tuskan ; Christopher W. Schadt ; Rytas VilgalysSource :
- Molecular ecology [ 1365-294X ] ; 2014.
Descripteurs français
- KwdFr :
- ADN bactérien (génétique), ADN fongique (génétique), ARN ribosomique 16S (génétique), Analyse de séquence d'ADN (MeSH), Bactéries (classification), Bactéries (génétique), Champignons (classification), Champignons (génétique), Espaceur de l'ADN ribosomique (génétique), Microbiologie du sol (MeSH), Microbiote (MeSH), Pinus (microbiologie), Populus (microbiologie), Quercus (microbiologie), Racines de plante (microbiologie), Rhizosphère (MeSH), Sol (classification).
- MESH :
- génétique : ADN bactérien, ADN fongique, ARN ribosomique 16S, Bactéries, Champignons, Espaceur de l'ADN ribosomique.
- microbiologie : Pinus, Populus, Quercus, Racines de plante.
- classification : Analyse de séquence d'ADN, Microbiologie du sol, Microbiote, Rhizosphère, Sol.
English descriptors
- KwdEn :
- Bacteria (classification), Bacteria (genetics), DNA, Bacterial (genetics), DNA, Fungal (genetics), DNA, Ribosomal Spacer (genetics), Fungi (classification), Fungi (genetics), Microbiota (MeSH), Pinus (microbiology), Plant Roots (microbiology), Populus (microbiology), Quercus (microbiology), RNA, Ribosomal, 16S (genetics), Rhizosphere (MeSH), Sequence Analysis, DNA (MeSH), Soil (classification), Soil Microbiology (MeSH).
- MESH :
- chemical , classification : Soil.
- chemical , genetics : DNA, Bacterial, DNA, Fungal, DNA, Ribosomal Spacer, RNA, Ribosomal, 16S.
- classification : Bacteria, Fungi.
- genetics : Bacteria, Fungi.
- microbiology : Pinus, Plant Roots, Populus, Quercus.
- Microbiota, Rhizosphere, Sequence Analysis, DNA, Soil Microbiology.
Abstract
Microbial communities in plant roots provide critical links between above- and belowground processes in terrestrial ecosystems. Variation in root communities has been attributed to plant host effects and microbial host preferences, as well as to factors pertaining to soil conditions, microbial biogeography and the presence of viable microbial propagules. To address hypotheses regarding the influence of plant host and soil biogeography on root fungal and bacterial communities, we designed a trap-plant bioassay experiment. Replicate Populus, Quercus and Pinus plants were grown in three soils originating from alternate field sites. Fungal and bacterial community profiles in the root of each replicate were assessed through multiplex 454 amplicon sequencing of four loci (i.e., 16S, SSU, ITS, LSU rDNA). Soil origin had a larger effect on fungal community composition than did host species, but the opposite was true for bacterial communities. Populus hosted the highest diversity of rhizospheric fungi and bacteria. Root communities on Quercus and Pinus were more similar to each other than to Populus. Overall, fungal root symbionts appear to be more constrained by dispersal and biogeography than by host availability.
DOI: 10.1111/mec.12821
PubMed: 24894495
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Robeson</name></author><author><name sortKey="Nelson, Jessica" sort="Nelson, Jessica" uniqKey="Nelson J" first="Jessica" last="Nelson">Jessica Nelson</name></author><author><name sortKey="Hodkinson, Brendan P" sort="Hodkinson, Brendan P" uniqKey="Hodkinson B" first="Brendan P" last="Hodkinson">Brendan P. Hodkinson</name></author><author><name sortKey="Tuskan, Gerald" sort="Tuskan, Gerald" uniqKey="Tuskan G" first="Gerald" last="Tuskan">Gerald Tuskan</name></author><author><name sortKey="Schadt, Christopher W" sort="Schadt, Christopher W" uniqKey="Schadt C" first="Christopher W" last="Schadt">Christopher W. Schadt</name></author><author><name sortKey="Vilgalys, Rytas" sort="Vilgalys, Rytas" uniqKey="Vilgalys R" first="Rytas" last="Vilgalys">Rytas Vilgalys</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2014">2014</date><idno type="RBID">pubmed:24894495</idno><idno type="pmid">24894495</idno><idno type="doi">10.1111/mec.12821</idno><idno type="wicri:Area/Main/Corpus">002156</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">002156</idno><idno type="wicri:Area/Main/Curation">002156</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">002156</idno><idno type="wicri:Area/Main/Exploration">002156</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants.</title><author><name sortKey="Bonito, Gregory" sort="Bonito, Gregory" uniqKey="Bonito G" first="Gregory" last="Bonito">Gregory Bonito</name><affiliation wicri:level="1"><nlm:affiliation>Royal Botanic Gardens, Melbourne, VIC., 3141, Australia; Department of Biology, Duke University, Durham, NC, 27708, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Royal Botanic Gardens, Melbourne, VIC., 3141, Australia; Department of Biology, Duke University, Durham, NC, 27708</wicri:regionArea><wicri:noRegion>27708</wicri:noRegion></affiliation></author><author><name sortKey="Reynolds, Hannah" sort="Reynolds, Hannah" uniqKey="Reynolds H" first="Hannah" last="Reynolds">Hannah Reynolds</name></author><author><name sortKey="Robeson, Michael S" sort="Robeson, Michael S" uniqKey="Robeson M" first="Michael S" last="Robeson">Michael S. Robeson</name></author><author><name sortKey="Nelson, Jessica" sort="Nelson, Jessica" uniqKey="Nelson J" first="Jessica" last="Nelson">Jessica Nelson</name></author><author><name sortKey="Hodkinson, Brendan P" sort="Hodkinson, Brendan P" uniqKey="Hodkinson B" first="Brendan P" last="Hodkinson">Brendan P. Hodkinson</name></author><author><name sortKey="Tuskan, Gerald" sort="Tuskan, Gerald" uniqKey="Tuskan G" first="Gerald" last="Tuskan">Gerald Tuskan</name></author><author><name sortKey="Schadt, Christopher W" sort="Schadt, Christopher W" uniqKey="Schadt C" first="Christopher W" last="Schadt">Christopher W. Schadt</name></author><author><name sortKey="Vilgalys, Rytas" sort="Vilgalys, Rytas" uniqKey="Vilgalys R" first="Rytas" last="Vilgalys">Rytas Vilgalys</name></author></analytic><series><title level="j">Molecular ecology</title><idno type="eISSN">1365-294X</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bacteria (classification)</term><term>Bacteria (genetics)</term><term>DNA, Bacterial (genetics)</term><term>DNA, Fungal (genetics)</term><term>DNA, Ribosomal Spacer (genetics)</term><term>Fungi (classification)</term><term>Fungi (genetics)</term><term>Microbiota (MeSH)</term><term>Pinus (microbiology)</term><term>Plant Roots (microbiology)</term><term>Populus (microbiology)</term><term>Quercus (microbiology)</term><term>RNA, Ribosomal, 16S (genetics)</term><term>Rhizosphere (MeSH)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Soil (classification)</term><term>Soil Microbiology (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (génétique)</term><term>ADN fongique (génétique)</term><term>ARN ribosomique 16S (génétique)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Bactéries (classification)</term><term>Bactéries (génétique)</term><term>Champignons (classification)</term><term>Champignons (génétique)</term><term>Espaceur de l'ADN ribosomique (génétique)</term><term>Microbiologie du sol (MeSH)</term><term>Microbiote (MeSH)</term><term>Pinus (microbiologie)</term><term>Populus (microbiologie)</term><term>Quercus (microbiologie)</term><term>Racines de plante (microbiologie)</term><term>Rhizosphère (MeSH)</term><term>Sol (classification)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="classification" xml:lang="en"><term>Soil</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Bacterial</term><term>DNA, Fungal</term><term>DNA, Ribosomal Spacer</term><term>RNA, Ribosomal, 16S</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Bacteria</term><term>Fungi</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Bacteria</term><term>Fungi</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN bactérien</term><term>ADN fongique</term><term>ARN ribosomique 16S</term><term>Bactéries</term><term>Champignons</term><term>Espaceur de l'ADN ribosomique</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Pinus</term><term>Populus</term><term>Quercus</term><term>Racines de plante</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Pinus</term><term>Plant Roots</term><term>Populus</term><term>Quercus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Microbiota</term><term>Rhizosphere</term><term>Sequence Analysis, DNA</term><term>Soil Microbiology</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Microbiologie du sol</term><term>Microbiote</term><term>Rhizosphère</term><term>Sol</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Microbial communities in plant roots provide critical links between above- and belowground processes in terrestrial ecosystems. Variation in root communities has been attributed to plant host effects and microbial host preferences, as well as to factors pertaining to soil conditions, microbial biogeography and the presence of viable microbial propagules. To address hypotheses regarding the influence of plant host and soil biogeography on root fungal and bacterial communities, we designed a trap-plant bioassay experiment. Replicate Populus, Quercus and Pinus plants were grown in three soils originating from alternate field sites. Fungal and bacterial community profiles in the root of each replicate were assessed through multiplex 454 amplicon sequencing of four loci (i.e., 16S, SSU, ITS, LSU rDNA). Soil origin had a larger effect on fungal community composition than did host species, but the opposite was true for bacterial communities. Populus hosted the highest diversity of rhizospheric fungi and bacteria. Root communities on Quercus and Pinus were more similar to each other than to Populus. Overall, fungal root symbionts appear to be more constrained by dispersal and biogeography than by host availability.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24894495</PMID><DateCompleted><Year>2014</Year><Month>08</Month><Day>15</Day></DateCompleted><DateRevised><Year>2017</Year><Month>11</Month><Day>16</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1365-294X</ISSN><JournalIssue CitedMedium="Internet"><Volume>23</Volume><Issue>13</Issue><PubDate><Year>2014</Year><Month>07</Month></PubDate></JournalIssue><Title>Molecular ecology</Title><ISOAbbreviation>Mol Ecol</ISOAbbreviation></Journal><ArticleTitle>Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants.</ArticleTitle><Pagination><MedlinePgn>3356-70</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/mec.12821</ELocationID><Abstract><AbstractText>Microbial communities in plant roots provide critical links between above- and belowground processes in terrestrial ecosystems. Variation in root communities has been attributed to plant host effects and microbial host preferences, as well as to factors pertaining to soil conditions, microbial biogeography and the presence of viable microbial propagules. To address hypotheses regarding the influence of plant host and soil biogeography on root fungal and bacterial communities, we designed a trap-plant bioassay experiment. Replicate Populus, Quercus and Pinus plants were grown in three soils originating from alternate field sites. Fungal and bacterial community profiles in the root of each replicate were assessed through multiplex 454 amplicon sequencing of four loci (i.e., 16S, SSU, ITS, LSU rDNA). Soil origin had a larger effect on fungal community composition than did host species, but the opposite was true for bacterial communities. Populus hosted the highest diversity of rhizospheric fungi and bacteria. Root communities on Quercus and Pinus were more similar to each other than to Populus. Overall, fungal root symbionts appear to be more constrained by dispersal and biogeography than by host availability.</AbstractText><CopyrightInformation>© 2014 John Wiley & Sons Ltd.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bonito</LastName><ForeName>Gregory</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Royal Botanic Gardens, Melbourne, VIC., 3141, Australia; Department of Biology, Duke University, Durham, NC, 27708, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Reynolds</LastName><ForeName>Hannah</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Robeson</LastName><ForeName>Michael S</ForeName><Initials>MS</Initials><Suffix>2nd</Suffix></Author><Author ValidYN="Y"><LastName>Nelson</LastName><ForeName>Jessica</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Hodkinson</LastName><ForeName>Brendan P</ForeName><Initials>BP</Initials></Author><Author ValidYN="Y"><LastName>Tuskan</LastName><ForeName>Gerald</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Schadt</LastName><ForeName>Christopher W</ForeName><Initials>CW</Initials></Author><Author ValidYN="Y"><LastName>Vilgalys</LastName><ForeName>Rytas</ForeName><Initials>R</Initials></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>Dryad</DataBankName><AccessionNumberList><AccessionNumber>10.5061/dryad.2B2DJ</AccessionNumber></AccessionNumberList></DataBank><DataBank><DataBankName>SRA</DataBankName><AccessionNumberList><AccessionNumber>SRP034435</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Mol Ecol</MedlineTA><NlmUniqueID>9214478</NlmUniqueID><ISSNLinking>0962-1083</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D021903">DNA, Ribosomal Spacer</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012987">Soil</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001419" MajorTopicYN="N">Bacteria</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D021903" MajorTopicYN="N">DNA, Ribosomal Spacer</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005658" MajorTopicYN="N">Fungi</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D064307" MajorTopicYN="N">Microbiota</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D028223" MajorTopicYN="N">Pinus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D029963" MajorTopicYN="N">Quercus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D058441" MajorTopicYN="N">Rhizosphere</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012987" MajorTopicYN="N">Soil</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">454 pyrosequencing</Keyword><Keyword MajorTopicYN="Y">Glomeromycota</Keyword><Keyword MajorTopicYN="Y">Pinus</Keyword><Keyword MajorTopicYN="Y">Populus</Keyword><Keyword MajorTopicYN="Y">Quercus</Keyword><Keyword MajorTopicYN="Y">bacterial communities</Keyword><Keyword MajorTopicYN="Y">fungal communities</Keyword><Keyword MajorTopicYN="Y">phylotyping</Keyword><Keyword MajorTopicYN="Y">root endophytes</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year><Month>02</Month><Day>24</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2014</Year><Month>05</Month><Day>09</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2014</Year><Month>05</Month><Day>20</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2014</Year><Month>6</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2014</Year><Month>6</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2014</Year><Month>8</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">24894495</ArticleId><ArticleId IdType="doi">10.1111/mec.12821</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country></list><tree><noCountry><name sortKey="Hodkinson, Brendan P" sort="Hodkinson, Brendan P" uniqKey="Hodkinson B" first="Brendan P" last="Hodkinson">Brendan P. Hodkinson</name><name sortKey="Nelson, Jessica" sort="Nelson, Jessica" uniqKey="Nelson J" first="Jessica" last="Nelson">Jessica Nelson</name><name sortKey="Reynolds, Hannah" sort="Reynolds, Hannah" uniqKey="Reynolds H" first="Hannah" last="Reynolds">Hannah Reynolds</name><name sortKey="Robeson, Michael S" sort="Robeson, Michael S" uniqKey="Robeson M" first="Michael S" last="Robeson">Michael S. Robeson</name><name sortKey="Schadt, Christopher W" sort="Schadt, Christopher W" uniqKey="Schadt C" first="Christopher W" last="Schadt">Christopher W. Schadt</name><name sortKey="Tuskan, Gerald" sort="Tuskan, Gerald" uniqKey="Tuskan G" first="Gerald" last="Tuskan">Gerald Tuskan</name><name sortKey="Vilgalys, Rytas" sort="Vilgalys, Rytas" uniqKey="Vilgalys R" first="Rytas" last="Vilgalys">Rytas Vilgalys</name></noCountry><country name="États-Unis"><noRegion><name sortKey="Bonito, Gregory" sort="Bonito, Gregory" uniqKey="Bonito G" first="Gregory" last="Bonito">Gregory Bonito</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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